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Cylindra
API Reference
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cylindra
Cylindra
cylindra
Overview
Installation
Basics
Usage
Usage
Start Cylindra
Fit Splines
Measure Lattice Parameters
Inspect CFT Results
Load & Save Projects
Custom Workflows
The Plugin System
Spline
Spline
Clip and Invert Splines
Spline Configurations
Molecules
Molecules
Spline to Molecules
Molecule Features
The "Expressions"
Split & Combine Molecules
Filter Molecules by Features
Transform Molecules
Feature Names
Alignment
Alignment
Conventional Methods in Cryo-ET Studies
Build Correlation Landscapes
Viterbi Alignment
Restricted Mesh Annealing (RMA)
Working with Many Projects
Working with Many Projects
Collect projects
Construct Batch Loaders
Average Across Projects
Working with External Softwares
Working with External Softwares
IMOD
RELION
Process Images
Simulate Tomograms
CLI Usage
Case Studies
Case Studies
Analyzing Microtubule Local Structures with RMA
Microtubule Seam-search
Segmented Subtomogram Averaging (SSTA)
Microtubule for Figures
API References
API References
cylindra.components
cylindra.core
cylindra.project
cylindra.cylmeasure
cylindra.cylfilters
cylindra.plugin
Widgets
Widgets
cylindra.widgets.main.CylindraMainWidget
cylindra.widgets.sta.SubtomogramAveraging
cylindra.widgets.subwidgets
cylindra.widgets.batch
Builtin Plugins
Builtin Plugins
cylindra_builtins.imod
cylindra_builtins.relion
API Reference
This section includes the API references of
cylindra
.